Broad-Enrich gene set enrichment testing for sets of broad genomic regions
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Department of Computational Medicine and Bioinformatics. Assistant Professor of Computational Medicine and Bioinformatics, Medical School. Assistant Professor of Biostatistics, School of Public Health. Ann Arbor, MI 48109-2218. PhD, Biostatistics, University of Cincinnati, 2007. MS, Biomathematics, North Carolina State University, 2000. BS, Mathematics, minors in Biology and Computer science, Xavier University, 1998.
ChIP-Enrich tests ChIP-seq peak data for enrichment of biological pathways, Gene Ontology terms, and other types of gene sets. The pre-defined gene sets are the same as used in LRpath. And can be browsed here. ENCODE enrichment testing results can be accessed here. Number of peaks a gene must ha.
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Broad-Enrich gene set enrichment testing for sets of broad genomic regionsDESCRIPTION
Broad-Enrich gene set enrichment testing for sets of broad genomic regions. Broad-Enrich tests sets of broad genomic regions e.g., from ChIP-seq data for histone modifications or copy number variations for enriched biological pathways, Gene Ontology terms, or other gene sets. The pre-defined gene sets are the same as used in LRpath, and can be browsed here. Broad-Enrich is also available as part of the Chip-Enrich R package Broad-Enrich.zip. Only use peaks within 1kb of a transcription start site.CONTENT
This site states the following, "Broad-Enrich gene set enrichment testing for sets of broad genomic regions." Our analyzers noticed that the web site also stated " Broad-Enrich tests sets of broad genomic regions e." The Website also stated ", from ChIP-seq data for histone modifications or copy number variations for enriched biological pathways, Gene Ontology terms, or other gene sets. The pre-defined gene sets are the same as used in LRpath, and can be browsed here. Broad-Enrich is also available as part of the Chip-Enrich R package Broad-Enrich. Only use peaks within 1kb of a transcription start site."MORE BUSINESSES
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